CrossMap

Versatile tool for converting genome coordinates in various file formats (BAM, BED, VCF).

Key Info

• URL: https://crossmap.sourceforge.net/
• Category: Nomenclature
• API: Yes
• Free: Free
• ACMG Relevance: N/A
• Link Status: Unchecked

Why It Matters

Unlike simpler liftover tools, it actively updates coordinate information directly within massive sequencing files without losing metadata.

STRC Research Usage

Not yet tested on E1659A.

Next Steps

• Verify URL accessibility
• Test with STRC E1659A variant if applicable
• Document specific results

Connections

• STRC Variant c.4976A>C — Misha [see-also]
• STRC Gene [about]
• [part-of] Genomics & Bioinformatics Tools